All modules for which code is available

• AdaptivePELE.adaptiveSampling
• AdaptivePELE.analysis.backtrackAdaptiveTrajectory
• AdaptivePELE.analysis.correctRMSD
• AdaptivePELE.analysis.foldersFirstBindingEvent
• AdaptivePELE.analysis.makePNGs
• AdaptivePELE.analysis.numberOfClusters
• AdaptivePELE.analysis.plotAdaptive
• AdaptivePELE.analysis.writeClusteringStructures
• AdaptivePELE.atomset.RMSDCalculator
• AdaptivePELE.atomset.SymmetryContactMapEvaluator
• AdaptivePELE.atomset.atomset
• AdaptivePELE.automateRoundsAdaptive
• AdaptivePELE.clustering.clustering
• AdaptivePELE.clustering.clusteringTypes
• AdaptivePELE.clustering.thresholdcalculator
• AdaptivePELE.clustering.thresholdcalculatortypes
• AdaptivePELE.simulation.simulationTypes
• AdaptivePELE.simulation.simulationrunner
• AdaptivePELE.spawning.densitycalculator
• AdaptivePELE.spawning.densitycalculatortypes
• AdaptivePELE.spawning.spawning
• AdaptivePELE.spawning.spawningTypes
• AdaptivePELE.utilities.clusteringUtilities
• AdaptivePELE.utilities.utilities
• AdaptivePELE.validator.controlFileValidator